Data Scraping - Increasing Accessibility by Scraping Information From PDF

You may have heard about data scraping which is a method that is being used by computer programs in extracting data from an output that comes from another program. To put it simply, this is a process which involves the automatic sorting of information that can be found on different resources including the internet which is inside an html file, PDF or any other documents. In addition to that, there is the collection of pertinent information. These pieces of information will be contained into the databases or spreadsheets so that the users can retrieve them later.

Most of the websites today have text that can be accessed and written easily in the source code. However, there are now other businesses nowadays that choose to make use of Adobe PDF files or Portable Document Format. This is a type of file that can be viewed by simply using the free software known as the Adobe Acrobat. Almost any operating system supports the said software. There are many advantages when you choose to utilize PDF files. Among them is that the document that you have looks exactly the same even if you put it in another computer so that you can view it. Therefore, this makes it ideal for business documents or even specification sheets. Of course there are disadvantages as well. One of which is that the text that is contained in the file is converted into an image. In this case, it is often that you may have problems with this when it comes to the copying and pasting.

This is why there are some that start scraping information from PDF. This is often called PDF scraping in which this is the process that is just like data scraping only that you will be getting information that is contained in your PDF files. In order for you to begin scraping information from PDF, you must choose and exploit a tool that is specifically designed for this process. However, you will find that it is not easy to locate the right tool that will enable you to perform PDF scraping effectively. This is because most of the tools today have problems in obtaining exactly the same data that you want without personalizing them.

Nevertheless, if you search well enough, you will be able to encounter the program that you are looking for. There is no need for you to have programming language knowledge in order for you to use them. You can easily specify your own preferences and the software will do the rest of the work for you. There are also companies out there that you can contact and they will perform the task since they have the right tools that they can use. If you choose to do things manually, you will find that this is indeed tedious and complicated whereas if you compare this to having professionals do the job for you, they will be able to finish it in no time at all. Scraping information from PDF is a process where you collect the information that can be found on the internet and this does not infringe copyright laws.

Source: http://ezinearticles.com/?Increasing-Accessibility-by-Scraping-Information-From-PDF&id=4593863

Web Scraping: working with APIs

APIs present researchers with a diverse set of data sources through a standardised access mechanism: send a pasted together HTTP request, receive JSON or XML in return. Today we tap into a range of APIs to get comfortable sending queries and processing responses.

These are the slides from the final class in Web Scraping through R: Web scraping for the humanities and social sciences

This week we explore how to use APIs in R, focusing on the Google Maps API. We then attempt to transfer this approach to query the Yandex Maps API. Finally, the practice section includes examples of working with the YouTube V2 API, a few ‘social’ APIs such as LinkedIn and Twitter, as well as APIs less off the beaten track (Cricket scores, anyone?).

I enjoyed teaching this course and hope to repeat and improve on it next year. When designing the course I tried to cram in everything I wish I had been taught early on in my PhD (resulting in information overload, I fear). Still, hopefully it has been useful to students getting started with digital data collection, showing on the one hand what is possible, and on the other giving some idea of key steps in achieving research objectives.

Download the .Rpres file to use in Rstudio here

A regular R script with code-snippets only can be accessed here

Slides from the first session here

Slides from the second session here

Slides from the third session here

Source: http://www.r-bloggers.com/web-scraping-working-with-apis/

Three Common Methods For Data Extraction

Probably the most common technique used traditionally to extract data from web pages this is to cook up some regular expressions that match the pieces you want (e.g., URL's and link titles). Our screen-scraper software actually started out as an application written in Perl for this very reason. In addition to regular expressions, you might also use some code written in something like Java or Active Server Pages to parse out larger chunks of text. Using raw regular expressions to pull out the data can be a little intimidating to the uninitiated, and can get a bit messy when a script contains a lot of them. At the same time, if you're already familiar with regular expressions, and your scraping project is relatively small, they can be a great solution.

Other techniques for getting the data out can get very sophisticated as algorithms that make use of artificial intelligence and such are applied to the page. Some programs will actually analyze the semantic content of an HTML page, then intelligently pull out the pieces that are of interest. Still other approaches deal with developing "ontologies", or hierarchical vocabularies intended to represent the content domain.

There are a number of companies (including our own) that offer commercial applications specifically intended to do screen-scraping. The applications vary quite a bit, but for medium to large-sized projects they're often a good solution. Each one will have its own learning curve, so you should plan on taking time to learn the ins and outs of a new application. Especially if you plan on doing a fair amount of screen-scraping it's probably a good idea to at least shop around for a screen-scraping application, as it will likely save you time and money in the long run.

So what's the best approach to data extraction? It really depends on what your needs are, and what resources you have at your disposal. Here are some of the pros and cons of the various approaches, as well as suggestions on when you might use each one:

Raw regular expressions and code

Advantages:

- If you're already familiar with regular expressions and at least one programming language, this can be a quick solution.

- Regular expressions allow for a fair amount of "fuzziness" in the matching such that minor changes to the content won't break them.

- You likely don't need to learn any new languages or tools (again, assuming you're already familiar with regular expressions and a programming language).

- Regular expressions are supported in almost all modern programming languages. Heck, even VBScript has a regular expression engine. It's also nice because the various regular expression implementations don't vary too significantly in their syntax.

Disadvantages:

- They can be complex for those that don't have a lot of experience with them. Learning regular expressions isn't like going from Perl to Java. It's more like going from Perl to XSLT, where you have to wrap your mind around a completely different way of viewing the problem.

- They're often confusing to analyze. Take a look through some of the regular expressions people have created to match something as simple as an email address and you'll see what I mean.

- If the content you're trying to match changes (e.g., they change the web page by adding a new "font" tag) you'll likely need to update your regular expressions to account for the change.

- The data discovery portion of the process (traversing various web pages to get to the page containing the data you want) will still need to be handled, and can get fairly complex if you need to deal with cookies and such.

When to use this approach: You'll most likely use straight regular expressions in screen-scraping when you have a small job you want to get done quickly. Especially if you already know regular expressions, there's no sense in getting into other tools if all you need to do is pull some news headlines off of a site.

Ontologies and artificial intelligence

Advantages:

- You create it once and it can more or less extract the data from any page within the content domain you're targeting.

- The data model is generally built in. For example, if you're extracting data about cars from web sites the extraction engine already knows what the make, model, and price are, so it can easily map them to existing data structures (e.g., insert the data into the correct locations in your database).

- There is relatively little long-term maintenance required. As web sites change you likely will need to do very little to your extraction engine in order to account for the changes.

Disadvantages:

- It's relatively complex to create and work with such an engine. The level of expertise required to even understand an extraction engine that uses artificial intelligence and ontologies is much higher than what is required to deal with regular expressions.

- These types of engines are expensive to build. There are commercial offerings that will give you the basis for doing this type of data extraction, but you still need to configure them to work with the specific content domain you're targeting.

- You still have to deal with the data discovery portion of the process, which may not fit as well with this approach (meaning you may have to create an entirely separate engine to handle data discovery). Data discovery is the process of crawling web sites such that you arrive at the pages where you want to extract data.

When to use this approach: Typically you'll only get into ontologies and artificial intelligence when you're planning on extracting information from a very large number of sources. It also makes sense to do this when the data you're trying to extract is in a very unstructured format (e.g., newspaper classified ads). In cases where the data is very structured (meaning there are clear labels identifying the various data fields), it may make more sense to go with regular expressions or a screen-scraping application.

Screen-scraping software

Advantages:

- Abstracts most of the complicated stuff away. You can do some pretty sophisticated things in most screen-scraping applications without knowing anything about regular expressions, HTTP, or cookies.

- Dramatically reduces the amount of time required to set up a site to be scraped. Once you learn a particular screen-scraping application the amount of time it requires to scrape sites vs. other methods is significantly lowered.

- Support from a commercial company. If you run into trouble while using a commercial screen-scraping application, chances are there are support forums and help lines where you can get assistance.

Disadvantages:

- The learning curve. Each screen-scraping application has its own way of going about things. This may imply learning a new scripting language in addition to familiarizing yourself with how the core application works.

- A potential cost. Most ready-to-go screen-scraping applications are commercial, so you'll likely be paying in dollars as well as time for this solution.

- A proprietary approach. Any time you use a proprietary application to solve a computing problem (and proprietary is obviously a matter of degree) you're locking yourself into using that approach. This may or may not be a big deal, but you should at least consider how well the application you're using will integrate with other software applications you currently have. For example, once the screen-scraping application has extracted the data how easy is it for you to get to that data from your own code?

When to use this approach: Screen-scraping applications vary widely in their ease-of-use, price, and suitability to tackle a broad range of scenarios. Chances are, though, that if you don't mind paying a bit, you can save yourself a significant amount of time by using one. If you're doing a quick scrape of a single page you can use just about any language with regular expressions. If you want to extract data from hundreds of web sites that are all formatted differently you're probably better off investing in a complex system that uses ontologies and/or artificial intelligence. For just about everything else, though, you may want to consider investing in an application specifically designed for screen-scraping.

As an aside, I thought I should also mention a recent project we've been involved with that has actually required a hybrid approach of two of the aforementioned methods. We're currently working on a project that deals with extracting newspaper classified ads. The data in classifieds is about as unstructured as you can get. For example, in a real estate ad the term "number of bedrooms" can be written about 25 different ways. The data extraction portion of the process is one that lends itself well to an ontologies-based approach, which is what we've done. However, we still had to handle the data discovery portion. We decided to use screen-scraper for that, and it's handling it just great. The basic process is that screen-scraper traverses the various pages of the site, pulling out raw chunks of data that constitute the classified ads. These ads then get passed to code we've written that uses ontologies in order to extract out the individual pieces we're after. Once the data has been extracted we then insert it into a database.

Source: http://ezinearticles.com/?Three-Common-Methods-For-Web-Data-Extraction&id=165416

Data Scraping Services - Login to Website Programmatically using C# for Web Scraping

In many scenario the data is available after login that you want to scrape. So to reach at the page where data is located you need to implement code in web scraper  that automatically takes usename/email and password to login into website, once login is done you can do crawling and parsing as required.

Many third party web scraping application provides functionality where you can locate login url and set login parameters and that login task will be called when scraper start and do web scraping.

Below is C# example of programmatically  login to demo login page

http://demo.webdata-scraping.com/login.php

Below is HTML code of Login form:

<form class="form-signin" id="login" method="post" role="form"> <h3 class="form-signin-heading">Please sign in</h3> <a href="#" id="flipToRecover" class="flipLink"> <div id="triangle-topright"></div> </a> <input type="email" class="form-control" name="loginEmail" id="loginEmail" placeholder="Email address" required autofocus> <input type="password" class="form-control" name="loginPass" id="loginPass" placeholder="Password" required> <button class="btn btn-lg btn-primary btn-block" name="login_submit" id="login_submit" type="submit">Sign in</button> </form>

<form class="form-signin" id="login" method="post" role="form">

            <h3 class="form-signin-heading">Please sign in</h3>

            <a href="#" id="flipToRecover" class="flipLink">

              <div id="triangle-topright"></div>

            </a>

            <input type="email" class="form-control" name="loginEmail" id="loginEmail" placeholder="Email address" required autofocus>

            <input type="password" class="form-control" name="loginPass" id="loginPass" placeholder="Password" required>

            <button class="btn btn-lg btn-primary btn-block" name="login_submit" id="login_submit" type="submit">Sign in</button>

</form>

In this code you can notice there is ID for email input box that is id=”loginEmail”  and password input box that is id=”loginPass”

so by taking this ID we will use below two method of webBrowser control and fill the value of each input box using following code

webBrowser1.Document.GetElementById("loginEmail").InnerText =textBox1.Text.ToString(); webBrowser1.Document.GetElementById("loginPass").InnerText = textBox2.Text.ToString();

webBrowser1.Document.GetElementById("loginEmail").InnerText =textBox1.Text.ToString();

webBrowser1.Document.GetElementById("loginPass").InnerText = textBox2.Text.ToString();

After the value filled to Email and Password input box we will just call click event of submit button which is named as Sign In

webBrowser1.Document.GetElementById("login_submit").InvokeMember("click");

webBrowser1.Document.GetElementById("login_submit").InvokeMember("click");

So this is very basic example how you can login to website programatically when you need to access data that is available after login to website.  This is very simple way in which you can work with Web Browser control but there are some other way as well using which you can do same thing.

Source: http://webdata-scraping.com/login-website-programmatically-using-c-web-scraping/

Data Extraction Services

Are you finding it tedious to perform your routine tasks as well as finding time to research for some information? Don't worry; all you have to do is outsource data extraction requirements to reliable service providers such as Hi-Tech BPO Services.

We can assist you in finding, extracting, gathering, processing and validating all the required data through our effective data extraction services. We can extract data from any given source such as websites, databases, printed documents, directories, etc.

With a whole plethora of data extraction services solutions; we are definitely a one stop solution to all your data extraction services requirements.

For utilizing our data extraction services, all you have to do is outsource data extraction requirements to us, and we will create effective strategies and extract the required data from all preferred sources. Then we will arrange all the extracted data in a systematic order.

Types of data extraction services provided by our data extraction India unit:

The data extraction India unit of Hi-Tech BPO Services can attend to all types of outsource data extraction requirements. Following are just some of the data extraction services we have delivered:

•    Data extraction from websites
•    Data extraction from databases
•    Extraction of data from directories
•    Extracting data from books
•    Data extraction from forms
•    Extracting data from printed materials

Features of Our Data Extraction Services:

•    Reliable collection of resources for data extraction
•    Extensive range of data extraction services
•    Data can be extracted from any available source be it a digital source or a hard copy source
•    Proper researching, extraction, gathering, processing and validation of data
•    Reasonably priced data extraction services
•    Quality and confidentiality ensured through various strict measures

Our data extraction India unit has the competency to handle any of your data extraction services requirements. Just provide us with your specific requirements and we will extract data accordingly from your preferred resources, if particularly specified. Otherwise we will completely rely on our collection of resources for extracting data for you.

Source: http://www.hitechbposervices.com/data-extraction.php

What you need to know about web scraping: How to understand, identify, and sometimes stop

NB: This is a gust article by Rami Essaid, co-founder and CEO of Distil Networks.

Here’s the thing about web scraping in the travel industry: everyone knows it exists but few know the details.

Details like how does web scraping happen and how will I know? Is web scraping just part of doing business online, or can it be stopped? And lastly, if web scraping can be stopped, should it always be stopped?

These questions and the challenge of web scraping are relevant to every player in the travel industry. Travel suppliers, OTAs and meta search sites are all being scraped. We have the data to prove it; over 30% of travel industry website visitors are web scrapers.

Google Analytics, and most other analytics tools do not automatically remove web scraper traffic, also called “bot” traffic, from your reports – so how would you know this non-human and potentially harmful traffic exists? You have to look for it.

This is a good time to note that I am CEO of a bot-blocking company called Distil Networks, and we serve the travel industry as well as digital publishers and eCommerce sites to protect against web scraping and data theft – we’re on a mission to make the web more secure.

So I am admittedly biased, but will do my best to provide an educational account of what we’ve learned to be true about web scraping in travel – and why this is an issue every travel company should at the very least be knowledgeable about.

Overall, I see an alarming lack of awareness around the prevalence of web scraping and bots in travel, and I see confusion around what to do about it. As we talk this through I’ll explain what these “bots” are, how to find them and how to manage them to better protect and leverage your travel business.

What are bots, web scrapers and site indexers? Which are good and which are bad?

The jargon around web scraping is confusing – bots, web scrapers, data extractors, price scrapers, site indexers and more – what’s the difference? Allow me to quickly clarify.

–> Bots: This is a general term that refers to non-human traffic, or robot traffic that is computer generated. Bots are essentially a line of code or a program that is created to perform specific tasks on a large scale.  Bots can include web scrapers, site indexers and fraud bots. Bots can be good or bad.

–> Web Scraper: (web harvesting or web data extraction) is a computer software technique of extracting information from websites (source, Wikipedia). Web scrapers are usually bad.

If your travel website is being scraped, it is most likely your competitors are collecting competitive intelligence on your prices. Some companies are even built to scrape and report on competitive price as a service. This is difficult to prove, but based on a recent Distil Networks study, prices seem to be main target.You can see more details of the study and infographic here.

One case study is Ryanair. They have been particularly unhappy about web scraping and won a lawsuit against a German company in 2008, incorporated Captcha in 2011 to stop new scrapers, and when Captcha wasn’t totally effective and Cheaptickets was still scraping, they took to the courts once again.

So Ryanair is doing what seems to be a consistent job of fending off web scrapers – at least after the scraping is performed. Unfortunately, the amount of time and energy that goes into identifying and stopping web scraping after the fact is very high, and usually this means the damage has been done.

This type of web scraping is bad because:

    Your competition is likely collecting your price data for competitive intelligence.

    Other travel companies are collecting your flights for resale without your consent.

    Identifying this type of web scraping requires a lot of time and energy, and stopping them generally requires a lot more.

Web scrapers are sometimes good

Sometimes a web scraper is a potential partner in disguise.

Meta search sites like Hipmunk sometimes get their start by scraping travel site data. Once they have enough data and enough traffic to be valuable they go to suppliers and OTAs with a partnership agreement. I’m naming Hipmunk because the Company is one of th+e few to fess up to site scraping, and one of the few who claim to have quickly stopped scraping when asked.

I’d wager that Hipmunk and others use(d) web scraping because it’s easy, and getting a decision maker at a major travel supplier on the phone is not easy, and finding legitimate channels to acquire supplier data is most definitely not easy.

I’m not saying you should allow this type of site scraping – you shouldn’t. But you should acknowledge the opportunity and create a proper channel for data sharing. And when you send your cease and desist notices to tell scrapers to stop their dirty work, also consider including a note for potential partners and indicate proper channels to request data access.

–> Site Indexer: Good.

Google, Bing and other search sites send site indexer bots all over the web to scour and prioritize content. You want to ensure your strategy includes site indexer access. Bing has long indexed travel suppliers and provided inventory links directly in search results, and recently Google has followed suit.

–> Fraud Bot: Always bad.

Fraud bots look for vulnerabilities and take advantage of your systems; these are the pesky and expensive hackers that game websites by falsely filling in forms, clicking ads, and looking for other vulnerabilities on your site. Reviews sections are a common attack vector for these types of bots.

How to identify and block bad bots and web scrapers

Now that you know the difference between good and bad web scrapers and bots, how do you identify them and how do you stop the bad ones? The first thing to do is incorporate bot-identification into your website security program. There are a number of ways to do this.

In-house

When building an in house solution, it is important to understand that fighting off bots is an arms race. Every day web scraping technology evolves and new bots are written. To have an effective solution, you need a dynamic strategy that is always adapting.

When considering in-house solutions, here are a few common tactics:

    CAPTCHAs – Completely Automated Public Turing Tests to Tell Computers and Humans Apart (CAPTCHA), exist to ensure that user input has not been generated by a computer. This has been the most common method deployed because it is simple to integrate and can be effective, at least at first. The problem is that Captcha’s can be beaten with a little workand more importantly, they are a nuisance to end usersthat can lead to a loss of business.

    Rate Limiting- Advanced scraping utilities are very adept at mimicking normal browsing behavior but most hastily written scripts are not. Bots will follow links and make web requests at a much more frequent, and consistent, rate than normal human users. Limiting IP’s that make several requests per second would be able to catch basic bot behavior.

    IP Blacklists - Subscribing to lists of known botnets & anonymous proxies and uploading them to your firewall access control list will give you a baseline of protection. A good number of scrapers employ botnets and Tor nodes to hide their true location and identity. Always maintain an active blacklist that contains the IP addresses of known scrapers and botnets as well as Tor nodes.

    Add-on Modules – Many companies already own hardware that offers some layer of security. Now, many of those hardware providers are also offering additional modules to try and combat bot attacks. As many companies move more of their services off premise, leveraging cloud hosting and CDN providers, the market share for this type of solution is shrinking.

    It is also important to note that these types of solutions are a good baseline but should not be expected to stop all bots. After all, this is not the core competency of the hardware you are buying, but a mere plugin.

Some example providers are:

    Impreva SecureSphere- Imperva offers Web Application Firewalls, or WAF’s. This is an appliance that applies a set of rules to an HTTP connection. Generally, these rules cover common attacks such as Cross-site Scripting (XSS) and SQL Injection. By customizing the rules to your application, many attacks can be identified and blocked. The effort to perform this customization can be significant and needs to be maintained as the application is modified.

    F5 – ASM – F5 offers many modules on their BigIP load balancers, one of which is the ASM. This module adds WAF functionality directly into the load balancer. Additionally, F5 has added policy-based web application security protection.

Software-as-a-service

There are website security software options that include, and sometimes specialize in web scraping protection. This type of solution, from my perspective, is the most effective path.

The SaaS model allows someone else to manage the problem for you and respond with more efficiency even as new threats evolve.  Again, I’m admittedly biased as I co-founded Distil Networks.

When shopping for a SaaS solution to protect against web scraping, you should consider some of the following factors:

•    Does the provider update new threats and rules in real time?

•    How does the solution block suspected non-human visitors?

•    Which types of proactive blocking techniques, such as code injections, does the provider deploy?

•    Which of the reactive techniques, such as rate limiting, are used?

•    Does the solution look at all of your traffic or a snapshot?

•    Can the solution block bots before they reach your infrastructure – and your data?

•    What kind of latency does this solution introduce?

I hope you now have a clearer understanding of web scraping and why it has become so prevalent in travel, and even more important, what you should do to protect and leverage these occurrences.

Source: http://www.tnooz.com/article/what-you-need-to-know-about-web-scraping-how-to-understand-identify-and-sometimes-stop/

Roles of Data Mining in Predicting, Tracking, and Containing the Ebola Outbreak

One of the most diverse continents on earth, Africa astounds the world with its vast savannas and great deserts and with its ancient architecture and modern cities, but Africa also has its share of tragedies and woes.

First identified in Democratic Republic of Congo’s Ebola River in 1976, Ebola Hemorrhagic Fever, a deadly zoonotic disease caused by Ebola virus, has been spreading in West Africa like a wildfire, engulfing everything on its way and creating widespread panic.

What has added insult to injury is the fact that the region has long endured the severe consequences of civil wars and social conflicts, and diseases like malaria, HIV/AIDS, yellow fever, cholera etc. have remained endemic to the region for a long time, causing tens of thousands of deaths every year.

Reportedly, Ebola has already killed at least 2,296 people, and there are about 3,685 confirmed cases of infection. Mortality rate has been swinging between 50% to 90%, depending on the quality of care and nutrition. According to WHO, the disease is likely to infect as much as 20,000 people before it is finally brought under control.

Crisis of Data

When it comes to healthcare management, clinical data is one of the key components. The value of data becomes more urgent in the emergency situation like that of West Africa. The more relevant data you have, the bigger picture you can create for taking aggressive measures. To use Peter Drucker’s words, “What gets measured gets managed.”

Factual data is a precondition for the doctors and health science experts working in the field for measuring and managing the situation. Data helps them to assess their successes or failures and reorient their actions. One of the important reasons why the fight against the Ebola outbreak is turning out into a losing battle is the insufficiency of data. Recently, Scientific American magazine wrote:

Right now, there are not even enough beds for sick patients nor enough data coming in to help track cases. Surveillance and tracking of those who were possibly exposed to Ebola remain inadequate.

In Science magazine, Gretchen Vogel suggests that the death toll of Ebola patients could be much higher than it is currently estimated. She says, “Exactly how many unrecorded Ebola deaths have occurred will never be known. Health officials are keeping track of suspected and probable cases, many of which are people who died before they could be tested.” Greg Slabodkin voices similar concerns in Health Data Management and points at the need of an integrated global biosurveillance system.

The absence of reliable and actionable data has badly hampered the efforts of combatting Ebola and providing proper medical care to the victims. CDC Director Dr. Tom Frieden describes it as a “fog-of-war situation”.

Data Mining: Bots Were the First to Warn

When you flip the coin, however, the situation is not completely bleak and desperate. Even if Big Data technologies have fallen short in predicting, tracking, and containing the epidemic, mainly due to the lack of data from the ground, it has not entirely failed. Data scientists and healthcare experts world over are making concerted efforts to know, track, and defeat the Ebola virus—some on the ground and some in their labs.

The increasing level of collaboration among the biomedical specialists, geneticist, virologists, and IT experts has definitely contributed to slow down the transmission of the virulent disease dubbed as “the plague of modern day”. Médecins Sans Frontières and Healthmap.org are the excellent examples in this regard.

    “By deploying bots and crawlers and by using advanced machine learning algorithms, the Boston-based global infectious disease surveillance system, HealthMap was able to predict and raise concerns about the spread of a mysterious hemorrhagic fever in West Africa nine days earlier than WHO did.”

Run by a team of 45 researchers, epidemiologists, and software developers at Boston Children’s Hospital, HealthMap mines data from search engine queries, social media platforms, health information sites, news reports and crowd-sourced information to track the transmission of the disease and provides an up-to-date timeline report with an interactive map, making it easier for the international health agencies to devise more effective action plans.

HealthMap serves as a good example of how crucial Big Data and data mining technologies could be for handling a healthcare emergency with fact-based and data-driven decisions.

Ebola Data

In their letter to The Lancet, research scientist Rashid Ansumana and his colleagues, working on Ebola in Sierra Leone, highlighted on the need of developing epidemic surveillance systems “by adopting new data-sharing technologies.” They wrote, “Emerging technologies can help early warning systems, outbreak response, and communication between health-care providers, wildlife and veterinary professionals, local and national health authorities, and international health agencies.”

Data-Driven Initiatives to Control the Outbreak

The era of systematic use of data for making better epidemiological predictions and for finding effective healthcare solutions began with Google Flue Trends in 2007, and the rapidly developing tools, technologies, and practices in Big Data have increased the roles of data in healthcare management.

There are a number of data-driven undertakings in progress which have contributed to counter the raging spread of Ebola. Brockmann Lab, run by Professor Dirk Brockmann and his colleagues, for example, has created a computer model for studying correlations and probabilities in the explosion of new cases of infection.

World Airtraffic  Transportation and Relative Import Risk, Source: Brockmann Lab

By applying computational and statistical models, they predict which areas, cities or regions in the world are at the risk of becoming the next Ebola epidemic hotspots. Similarly, Alessandro Vespignani–a network scientist, statistical physicist, and Northeastern professor–has been using human mobility network data to track the cases of Ebola infection and dissemination.

The Swedish NGO Flowminder Foundation has been aggregating, mining, and analyzing anonymized mobile phone location data and is developing national mobility estimates for West Africa to help the local and international agencies to combat the disease.

Meanwhile, innovations with Epi Info VHF, a software tool for case management, contact tracing, analysis and reporting services for Ebola and other hemorrhagic fever outbreaks and OpenStreetMap project for getting location information and spatial data of the affected areas have further helped to guide the intervention initiatives.

However, with all optimism about the growing roles of Big Data and data mining, we also need to be mindful about their limitations. Newsweek aptly puts: “While no media-trawling bot could ever replace national and international health agencies, such tools may be starting to help fill in some of the most gaping holes in real-time knowledge.”

Source: http://www.grepsr.com/blog/data-mining-tracking-ebola-outbreak/